Information for Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer (Motif 20)

T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G
Reverse Opposite:
A G T C G C A T T C G A T C G A C A G T C A T G T A C G G A C T G A C T A G C T
p-value:1e-143
log p-value:-3.309e+02
FDR:NA
Information Content per bp:1.473
Number of Target Sequences with motif290.0
Percentage of Target Sequences with motif30.56%
Number of Background Sequences with motif2287.9
Percentage of Background Sequences with motif4.83%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AAACMATTAN
AAACMATTAN
 T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G
T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

BARX2/MA1471.1/Jaspar

Match Rank:2
Score:0.91
Offset:-2
Orientation:forward strand
Alignment:--AAACMATTAN
AAAAACCATTAC
 A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G
C T G A C G T A G C T A C G T A T G C A G A T C T G A C T C G A C A G T G A C T C G T A T A G C

BARX1/MA0875.1/Jaspar

Match Rank:3
Score:0.87
Offset:2
Orientation:forward strand
Alignment:AAACMATTAN
--GCAATTAG
 T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G
A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G

VENTX/MA0724.1/Jaspar

Match Rank:4
Score:0.86
Offset:1
Orientation:forward strand
Alignment:AAACMATTAN
-ACCGATTAG
 T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G
A C G T C G T A T G A C G A T C T C A G G T C A A C G T A C G T C G T A C T A G

tup/MA0248.1/Jaspar

Match Rank:5
Score:0.86
Offset:3
Orientation:reverse strand
Alignment:AAACMATTAN
---CAATTAA
 T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G
A C G T A C G T A C G T G A T C G T C A G T C A A C G T A C G T C G T A C G T A

ftz/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.85
Offset:1
Orientation:reverse strand
Alignment:AAACMATTAN
-GNCAATTA-
 T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G
A C G T C T A G C T A G G A T C G T C A G T C A C G A T G C A T C G T A A C G T

Isl1/MA1608.1/Jaspar

Match Rank:7
Score:0.85
Offset:1
Orientation:forward strand
Alignment:AAACMATTAN--
-ATCCATTAGCA
 T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T
A C G T C T G A A C G T G A T C G T A C C T G A G C A T G A C T G C T A C T A G A G T C T G C A

Ubx/dmmpmm(Pollard)/fly

Match Rank:8
Score:0.85
Offset:3
Orientation:forward strand
Alignment:AAACMATTAN
---CAATTA-
 T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G
A C G T A C G T A C G T G T A C G T C A C G T A A C G T G C A T C G T A A C G T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:9
Score:0.84
Offset:-2
Orientation:forward strand
Alignment:--AAACMATTAN--
AAAAACCATTAAGG
 A C G T A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:10
Score:0.83
Offset:2
Orientation:reverse strand
Alignment:AAACMATTAN
--BCMATTAG
 T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G
A C G T A C G T A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G