Information for Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer (Motif 19)

A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T
Reverse Opposite:
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A
p-value:1e-202
log p-value:-4.652e+02
FDR:NA
Information Content per bp:1.595
Number of Target Sequences with motif876.0
Percentage of Target Sequences with motif35.68%
Number of Background Sequences with motif5426.6
Percentage of Background Sequences with motif11.97%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TTRAGTGSYK
TTRAGTGSYK
 A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T
A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:2
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TTRAGTGSYK
TTGAGTGSTT
 A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T
G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:3
Score:0.93
Offset:-1
Orientation:reverse strand
Alignment:-TTRAGTGSYK
CTYRAGTGSY-
 A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T
A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:4
Score:0.92
Offset:-1
Orientation:forward strand
Alignment:-TTRAGTGSYK
BTBRAGTGSN-
 A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T
A T G C G A C T A G C T C T A G C G T A C T A G C G A T C T A G A T C G G A T C A C G T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:5
Score:0.91
Offset:0
Orientation:reverse strand
Alignment:TTRAGTGSYK
TTAAGTGCTT
 A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T
A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

NKX2-3/MA0672.1/Jaspar

Match Rank:6
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TTRAGTGSYK
NTCAAGTGGN-
 A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T

NKX2-8/MA0673.1/Jaspar

Match Rank:7
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TTRAGTGSYK
NTCAAGTGG--
 A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T
A G C T C G A T A T G C C T G A C T G A C T A G C A G T C T A G A T C G A C G T A C G T

Nkx3-1/MA0124.2/Jaspar

Match Rank:8
Score:0.90
Offset:0
Orientation:reverse strand
Alignment:TTRAGTGSYK
TTAAGTGGT-
 A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T
G A C T C G A T C T G A C T G A A C T G C G A T T C A G A T C G A G C T A C G T

vnd/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.89
Offset:-3
Orientation:forward strand
Alignment:---TTRAGTGSYK-
NTGTNAAGTGGNNN
 A C G T A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T A C G T
C A G T C G A T C A T G C G A T A G C T C T G A C G T A A T C G A G C T C T A G A T C G A G C T A C G T A C T G

NKX2-5/MA0063.2/Jaspar

Match Rank:10
Score:0.89
Offset:-2
Orientation:reverse strand
Alignment:--TTRAGTGSYK
NNTTGAGTGNN-
 A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T
C G A T A G C T C G A T G C A T C T A G C G T A C T A G G A C T C T A G A C T G A G C T A C G T