Information for Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer (Motif 173)

G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A
Reverse Opposite:
C G A T G C A T A C G T C G A T A G T C C G T A A C G T A C G T C T A G A G T C G A C T C A G T
p-value:1e-1011
log p-value:-2.329e+03
FDR:NA
Information Content per bp:1.582
Number of Target Sequences with motif6330.0
Percentage of Target Sequences with motif25.98%
Number of Background Sequences with motif3507.8
Percentage of Background Sequences with motif10.46%
Average Position of motif in Targets50.8 +/- 22.2bp
Average Position of motif in Background49.5 +/- 31.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:HDGYAATGAAAN
HDGYAATGAAAN
 G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.94
Offset:1
Orientation:forward strand
Alignment:HDGYAATGAAAN
-GGCMATGAAA-
 G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A
A C G T C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.94
Offset:1
Orientation:forward strand
Alignment:HDGYAATGAAAN
-GGYAATGAAA-
 G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A
A C G T C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A A C G T

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.90
Offset:1
Orientation:forward strand
Alignment:HDGYAATGAAAN
-RGCAATNAAA-
 G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A
A C G T C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A A C G T

HOXA10/MA0899.1/Jaspar

Match Rank:5
Score:0.89
Offset:1
Orientation:forward strand
Alignment:HDGYAATGAAAN
-GGTAATAAAAA
 G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A
A C G T C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

HOXD9/MA0913.2/Jaspar

Match Rank:6
Score:0.89
Offset:2
Orientation:forward strand
Alignment:HDGYAATGAAAN
--GCAATAAAAC
 G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A
A C G T A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.88
Offset:1
Orientation:forward strand
Alignment:HDGYAATGAAAN
-VGCCATAAAA-
 G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A
A C G T T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A A C G T

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.87
Offset:1
Orientation:reverse strand
Alignment:HDGYAATGAAAN
-KGCCATAAAA-
 G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A
A C G T C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A A C G T

CDX2/MA0465.2/Jaspar

Match Rank:9
Score:0.86
Offset:0
Orientation:forward strand
Alignment:HDGYAATGAAAN
AAGCAATAAAAA
 G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A
C T G A C G T A C T A G G A T C G T C A C T G A A G C T C G T A C G T A G C T A C G T A G C T A

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:10
Score:0.85
Offset:2
Orientation:forward strand
Alignment:HDGYAATGAAAN
--CYHATAAAAN
 G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A
A C G T A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C