Information for Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer (Motif 171)

C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A
Reverse Opposite:
G C A T A C G T C G A T A G T C G T C A A G C T C A G T C T A G A T G C G A T C
p-value:1e-983
log p-value:-2.265e+03
FDR:NA
Information Content per bp:1.611
Number of Target Sequences with motif4745.0
Percentage of Target Sequences with motif21.73%
Number of Background Sequences with motif1964.3
Percentage of Background Sequences with motif7.35%
Average Position of motif in Targets51.6 +/- 23.1bp
Average Position of motif in Background51.2 +/- 30.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GGCMATGAAA
GGCMATGAAA
 C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A
C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:forward strand
Alignment:GGCMATGAAA
VGCCATAAAA
 C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A
T C A G T A C G G A T C G T A C T C G A C G A T C T G A C G T A G C T A C G T A

Hoxd12(Homeobox)/ChickenMSG-Hoxd12.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.94
Offset:-1
Orientation:forward strand
Alignment:-GGCMATGAAA-
HDGYAATGAAAN
 A C G T C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T
G T C A C T G A T C A G G A T C T G C A T G C A A C G T T C A G C G T A C G T A C G T A G C T A

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:4
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:GGCMATGAAA
KGCCATAAAA
 C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A

Hoxa9(Homeobox)/ChickenMSG-Hoxa9.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:5
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GGCMATGAAA
RGCAATNAAA
 C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A
C T A G T A C G G A T C G T C A T G C A A C G T T G C A G C T A T C G A T G C A

Hoxa10(Homeobox)/ChickenMSG-Hoxa10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:6
Score:0.93
Offset:0
Orientation:forward strand
Alignment:GGCMATGAAA
GGYAATGAAA
 C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A
C T A G T A C G G A C T T G C A T G C A C G A T T A C G C T G A T C G A C T G A

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:7
Score:0.93
Offset:1
Orientation:forward strand
Alignment:GGCMATGAAA-
-CYHATAAAAN
 C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T
A C G T T A G C G A T C G T A C C T G A G C A T C T G A C G T A T G C A C G T A G A T C

Hoxd13(Homeobox)/ChickenMSG-Hoxd13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:8
Score:0.91
Offset:0
Orientation:forward strand
Alignment:GGCMATGAAA
NCYAATAAAA
 C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A
C T A G T A G C A G T C G T C A C T G A A C G T C G T A C G T A C G T A G C T A

HOXA10/MA0899.1/Jaspar

Match Rank:9
Score:0.90
Offset:0
Orientation:forward strand
Alignment:GGCMATGAAA-
GGTAATAAAAA
 C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T
C T A G T C A G G A C T T G C A T C G A G C A T C G T A C G T A G T C A G T C A G T C A

HOXD9/MA0913.2/Jaspar

Match Rank:10
Score:0.89
Offset:1
Orientation:forward strand
Alignment:GGCMATGAAA-
-GCAATAAAAC
 C T A G T A C G G A T C G T C A T C G A A C G T T C A G C G T A C G T A C G T A A C G T
A C G T T C A G A G T C G T C A T C G A C G A T G C T A C G T A C G T A G T C A G A T C