Information for Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer (Motif 163)

C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C
Reverse Opposite:
C A T G T A C G G A T C G T A C T C G A C A G T C G T A C G T A G C T A G T C A
p-value:1e-2030
log p-value:-4.675e+03
FDR:NA
Information Content per bp:1.534
Number of Target Sequences with motif13654.0
Percentage of Target Sequences with motif49.71%
Number of Background Sequences with motif6013.4
Percentage of Background Sequences with motif22.93%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hoxa11(Homeobox)/ChickenMSG-Hoxa11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TTTTATGGCM
TTTTATGGCM
 C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C
C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C

Hoxd11(Homeobox)/ChickenMSG-Hoxd11.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:2
Score:0.99
Offset:0
Orientation:reverse strand
Alignment:TTTTATGGCM
TTTTATGGCB
 C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C
G C A T C G A T G C A T G A C T G C T A A G C T C A T G C T A G A T G C A G T C

Hoxa13(Homeobox)/ChickenMSG-Hoxa13.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:3
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGGCM
NTTTTATDRG-
 A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C
C T A G G C A T A C G T G C A T G A C T C G T A G A C T C A T G C T A G A T C G A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:4
Score:0.95
Offset:-2
Orientation:reverse strand
Alignment:--TTTTATGGCM
DGWTTTATGRCN
 A C G T A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C
C A G T C A T G G C A T C G A T C G A T C G A T C T G A A G C T C A T G C T A G A G T C A T G C

Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer

Match Rank:5
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TTTTATGGCM
TTTAATTGCN
 C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C
C G A T A G C T C G A T G C T A C G T A G A C T C A G T C T A G T A G C A T G C

caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer

Match Rank:6
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:TTTTATGGCM
WTTTATGRCC
 C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C
C G A T A C G T G C A T G A C T G T C A A G C T A C T G C T A G A G T C G A T C

HOXA10/MA0899.1/Jaspar

Match Rank:7
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGGCM
NTTTTATTACN
 A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C
C A G T C A G T C A G T G C A T G C A T C G T A A G C T A C G T C T G A A G T C G A T C

cad/MA0216.2/Jaspar

Match Rank:8
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGGCM
TTTTTATGGCC
 A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C
C A G T G C A T A C G T A C G T C G A T C T G A A G C T C A T G C T A G A G T C G A T C

Hoxd10(Homeobox)/ChickenMSG-Hoxd10.Flag-ChIP-Seq(GSE86088)/Homer

Match Rank:9
Score:0.94
Offset:0
Orientation:reverse strand
Alignment:TTTTATGGCM
TTTCATKGCC
 C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C
G C A T A C G T C G A T A G T C G T C A A G C T C A G T C T A G A T G C G A T C

HOXD9/MA0913.2/Jaspar

Match Rank:10
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-TTTTATGGCM
NTTTTATTGC-
 A C G T C A G T C G A T G C A T G C A T G T C A A G C T C A T G C T A G A T G C G T A C
C T A G C A G T A C G T C G A T C G A T C G T A A G C T C A G T T C A G A G T C A C G T