Information for HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer (Motif 153)

C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C
Reverse Opposite:
C A T G T A G C C T G A G A T C C T A G G A C T G T C A A G C T
p-value:1e-1463
log p-value:-3.371e+03
FDR:NA
Information Content per bp:1.693
Number of Target Sequences with motif10730.0
Percentage of Target Sequences with motif20.44%
Number of Background Sequences with motif4350.3
Percentage of Background Sequences with motif8.77%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:RTACGTGC
RTACGTGC
 C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C
C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:2
Score:0.97
Offset:1
Orientation:forward strand
Alignment:RTACGTGC-
-TACGTGCV
 C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T
A C G T A C G T C T G A G A T C A T C G G A C T T C A G G T A C T A G C

ARNT::HIF1A/MA0259.1/Jaspar

Match Rank:3
Score:0.97
Offset:0
Orientation:forward strand
Alignment:RTACGTGC
GGACGTGC
 C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C
T A C G A C T G T C G A A G T C A C T G A C G T A C T G T A G C

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:4
Score:0.97
Offset:-2
Orientation:reverse strand
Alignment:--RTACGTGC
GGGTACGTGC
 A C G T A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C
C T A G A T C G T C A G C A G T C T G A A T G C A C T G A G C T A C T G G T A C

HIF1A/MA1106.1/Jaspar

Match Rank:5
Score:0.96
Offset:0
Orientation:forward strand
Alignment:RTACGTGC--
GTACGTGCCC
 C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T
T A C G A G C T C G T A A G T C C T A G A G C T T C A G G T A C A T G C A T G C

BIM1/MA0964.1/Jaspar

Match Rank:6
Score:0.89
Offset:0
Orientation:forward strand
Alignment:RTACGTGC--
GCACGTGACC
 C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T A C G T
A C T G G T A C C T G A G A T C T C A G G A C T C A T G G T C A A G T C T A G C

BIM3/MA0966.1/Jaspar

Match Rank:7
Score:0.87
Offset:-1
Orientation:forward strand
Alignment:-RTACGTGC-
AGCACGTGCT
 A C G T C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C A C G T
C T G A A C T G G A T C C G T A G A T C C T A G G C A T C T A G T G A C G A C T

MYC4/MA0569.1/Jaspar

Match Rank:8
Score:0.87
Offset:0
Orientation:forward strand
Alignment:RTACGTGC
ACACGTGC
 C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C
T C G A G T A C C G T A A G T C C T A G A G C T A C T G A G T C

Arnt/MA0004.1/Jaspar

Match Rank:9
Score:0.87
Offset:1
Orientation:forward strand
Alignment:RTACGTGC
-CACGTG-
 C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C
A C G T G T A C C T G A A G T C A C T G A C G T A C T G A C G T

BHLH13/MA0958.1/Jaspar

Match Rank:10
Score:0.87
Offset:0
Orientation:forward strand
Alignment:RTACGTGC
GCACGTGC
 C T G A C A G T C T G A A G T C C T A G G A C T A T C G G T A C
T C A G G T A C C G T A A G T C C T A G G A C T A C T G A G T C