Information for Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer (Motif 149)

C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C
Reverse Opposite:
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A
p-value:1e-418
log p-value:-9.637e+02
FDR:NA
Information Content per bp:1.611
Number of Target Sequences with motif818.0
Percentage of Target Sequences with motif18.71%
Number of Background Sequences with motif1168.7
Percentage of Background Sequences with motif2.65%
Average Position of motif in Targets51.3 +/- 24.1bp
Average Position of motif in Background50.6 +/- 30.0bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:TGACANARRCCAGRC
TGACANARRCCAGRC
 C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C
C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:2
Score:0.69
Offset:6
Orientation:reverse strand
Alignment:TGACANARRCCAGRC-
------ATGCCAGACN
 C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C

grh/dmmpmm(Papatsenko)/fly

Match Rank:3
Score:0.64
Offset:8
Orientation:reverse strand
Alignment:TGACANARRCCAGRC-
--------AGCAGGTA
 C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T C G A T A C G G T A C C G T A A C T G T C A G G C A T G C T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.63
Offset:9
Orientation:reverse strand
Alignment:TGACANARRCCAGRC----
---------CCAGACRSVB
 C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:5
Score:0.62
Offset:9
Orientation:reverse strand
Alignment:TGACANARRCCAGRC--
---------CCAGACAG
 C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G

PB0060.1_Smad3_1/Jaspar

Match Rank:6
Score:0.62
Offset:4
Orientation:forward strand
Alignment:TGACANARRCCAGRC------
----CAAATCCAGACATCACA
 C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

CG14718(RRM)/Drosophila_melanogaster-RNCMPT00006-PBM/HughesRNA

Match Rank:7
Score:0.61
Offset:9
Orientation:forward strand
Alignment:TGACANARRCCAGRC--
---------CCAGATGN
 C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C A G T C C G T A A C T G C G T A A C G T A T C G T A G C

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.61
Offset:8
Orientation:reverse strand
Alignment:TGACANARRCCAGRC
--------CACAGN-
 C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T

sma-4/MA0925.1/Jaspar

Match Rank:9
Score:0.60
Offset:7
Orientation:reverse strand
Alignment:TGACANARRCCAGRC---
-------NNCCAGACANN
 C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A G C T G T A C A G T C C G T A A C T G C G T A G T A C C G T A A G T C A C G T

ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:TGACANARRCCAGRC
AGAGRRACAGCWGAC
 C G A T C T A G C T G A A T G C C T G A T C G A C G T A C T G A T C G A T A G C A G T C C G T A A C T G T C G A A T G C
T C G A C T A G C G T A C T A G C T G A T C A G C G T A A G T C C G T A T C A G T G A C G C A T A C T G C G T A A G T C