Information for Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer (Motif 142)

A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T
Reverse Opposite:
C T G A A C T G T C G A T G A C G A T C G C T A T A G C T G A C G T A C C G T A T A G C T C A G
p-value:1e-529
log p-value:-1.219e+03
FDR:NA
Information Content per bp:1.654
Number of Target Sequences with motif567.0
Percentage of Target Sequences with motif42.16%
Number of Background Sequences with motif1049.6
Percentage of Background Sequences with motif2.41%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Gli2(Zf)/GM2-Gli2-ChIP-Chip(GSE112702)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:YSTGGGTGGTCT
YSTGGGTGGTCT
 A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T
A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:2
Score:0.97
Offset:0
Orientation:forward strand
Alignment:YSTGGGTGGTCT
CGTGGGTGGTCC
 A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T
A G T C A T C G G C A T C T A G A C T G T A C G C G A T T C A G C A T G A G C T T A G C G A T C

GLI3/MA1491.1/Jaspar

Match Rank:3
Score:0.93
Offset:-3
Orientation:reverse strand
Alignment:---YSTGGGTGGTCT
CGNCGTGGGTGGTCN
 A C G T A C G T A C G T A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T
T A G C C T A G G C T A A T G C C A T G A G C T C A T G C A T G A T C G C A G T A C T G A C T G A C G T T G A C A C G T

GLI2/MA0734.2/Jaspar

Match Rank:4
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---YSTGGGTGGTCT
CGNCGTGGGTGGTCN
 A C G T A C G T A C G T A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T
T A G C C T A G G C T A A T G C C A T G G A C T C A T G A C T G A C T G C A G T C T A G C T A G A C G T T G A C A C G T

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:5
Score:0.78
Offset:-1
Orientation:reverse strand
Alignment:-YSTGGGTGGTCT----
NNANTGGTGGTCTTNNN
 A C G T A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T A C G T A C G T A C G T A C G T
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G

ZBTB7C/MA0695.1/Jaspar

Match Rank:6
Score:0.77
Offset:1
Orientation:reverse strand
Alignment:YSTGGGTGGTCT-
-NTCGGTGGTCGC
 A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T A C G T
A C G T A C G T C A G T A G T C C A T G C A T G C A G T T C A G A C T G C A G T G A T C A T C G G A T C

PB0025.1_Glis2_1/Jaspar

Match Rank:7
Score:0.77
Offset:-1
Orientation:reverse strand
Alignment:-YSTGGGTGGTCT---
NTNTGGGGGGTCNNNA
 A C G T A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T A C G T A C G T A C G T
G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A

GLIS3(Zf)/Thyroid-Glis3.GFP-ChIP-Seq(GSE103297)/Homer

Match Rank:8
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---YSTGGGTGGTCT
CTCCCTGGGAGGCCN
 A C G T A C G T A C G T A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T
T A G C G C A T A G T C G A T C A T G C G A C T C T A G A C T G A C T G C T G A A C T G C T A G A G T C T G A C C G A T

ZBTB7B/MA0694.1/Jaspar

Match Rank:9
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:YSTGGGTGGTCT-
-TTCGGTGGTCGC
 A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T A C G T
A C G T C A G T C G A T A G T C C T A G C A T G C A G T A T C G A C T G C A G T G A T C A T C G G A T C

GLIS1/MA0735.1/Jaspar

Match Rank:10
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----YSTGGGTGGTCT
GCTTCGTGGGGGGTCT
 A C G T A C G T A C G T A C G T A G T C A T C G G C A T C A T G A C T G A T C G C G A T C T A G A C T G A G C T T G A C G A C T
T A C G G T A C C G A T G C A T G T A C A C T G G A C T A C T G C T A G A T C G A T C G C A T G A T C G G C A T T G A C C A G T