Information for Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer (Motif 116)

C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G
Reverse Opposite:
A T G C T A G C C T G A C G T A A C G T G T A C G T A C C T G A A G T C C G T A C T G A G T A C
p-value:1e-5822
log p-value:-1.341e+04
FDR:NA
Information Content per bp:1.633
Number of Target Sequences with motif6276.0
Percentage of Target Sequences with motif44.38%
Number of Background Sequences with motif890.0
Percentage of Background Sequences with motif2.60%
Average Position of motif in Targets0 +/- 0bp
Average Position of motif in Background0 +/- 0bp
Strand Bias (log2 ratio + to - strand density)0
Multiplicity (# of sites on avg that occur together)1
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NNTGTGGATTSS
NNTGTGGATTSS
 C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G
C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G

FOXH1/MA0479.1/Jaspar

Match Rank:2
Score:0.98
Offset:2
Orientation:reverse strand
Alignment:NNTGTGGATTSS-
--TGTGGATTNNN
 C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G A C G T
A C G T A C G T C G A T A C T G A C G T A C T G C A T G C G T A G C A T A C G T A T C G T C A G T C G A

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.78
Offset:3
Orientation:reverse strand
Alignment:NNTGTGGATTSS
---GTGGAT---
 C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G
A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T A C G T A C G T A C G T

MAL13P1.35(RRM)/Plasmodium_falciparum-RNCMPT00234-PBM/HughesRNA

Match Rank:4
Score:0.77
Offset:3
Orientation:reverse strand
Alignment:NNTGTGGATTSS
---GTGTAAT--
 C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G
A C G T A C G T A C G T A C T G A C G T A C T G A G C T C G T A G C T A A G C T A C G T A C G T

MZF1/MA0056.2/Jaspar

Match Rank:5
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-NNTGTGGATTSS
NNNTGGGGATTNN
 A C G T C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G
T C G A C G T A C T A G C G A T C T A G C T A G C A T G A C T G G C T A A C G T A C G T C G A T C A T G

RBM6(RRM)/Homo_sapiens-RNCMPT00170-PBM/HughesRNA

Match Rank:6
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:NNTGTGGATTSS
---CTGGATT--
 C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G
A C G T A C G T A C G T A G T C A C G T A C T G A C T G C G T A C G A T C A G T A C G T A C G T

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:7
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:NNTGTGGATTSS
NNTGTGGTTT--
 C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G
A C G T G A C T C A G T A C T G G A C T A C T G A C T G A G C T A G C T C G A T A C G T A C G T

RUNX1/MA0002.2/Jaspar

Match Rank:8
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-NNTGTGGATTSS
GTCTGTGGTTT--
 A C G T C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G
A C T G A G C T A G T C C G A T A T C G G A C T A C T G A C T G A G C T G A C T C G A T A C G T A C G T

dve/MA0915.1/Jaspar

Match Rank:9
Score:0.69
Offset:4
Orientation:reverse strand
Alignment:NNTGTGGATTSS
----NGGATTAN
 C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G
A C G T A C G T A C G T A C G T A G C T C T A G A C T G C G T A A C G T A C G T C G T A C A T G

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:10
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:NNTGTGGATTSS
-CTGTGGTTTN-
 C A T G G A C T G C A T A C T G A G C T A C T G A C T G C G T A G C A T A G C T A T C G T A C G
A C G T G A T C A C G T A C T G A G C T A C T G A C T G A G C T A G C T C G A T A T C G A C G T