Information for Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer (Motif 112)

A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G
Reverse Opposite:
T G A C G A T C G C A T C T G A C G A T C T A G A G C T G T C A G T C A C G T A A G T C C G T A C G T A A T C G T C A G
p-value:1e-1131
log p-value:-2.605e+03
FDR:NA
Information Content per bp:1.601
Number of Target Sequences with motif1454.0
Percentage of Target Sequences with motif26.45%
Number of Background Sequences with motif871.6
Percentage of Background Sequences with motif1.99%
Average Position of motif in Targets52.8 +/- 19.5bp
Average Position of motif in Background50.3 +/- 27.5bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Foxa3(Forkhead)/Liver-Foxa3-ChIP-Seq(GSE77670)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:BSNTGTTTACWYWGN
BSNTGTTTACWYWGN
 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G
A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G

Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer

Match Rank:2
Score:0.97
Offset:1
Orientation:forward strand
Alignment:BSNTGTTTACWYWGN
-CNTGTTTACATA--
 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G
A C G T A T G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A G A T C G C T A A G C T C G T A A C G T A C G T

FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:3
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:BSNTGTTTACWYWGN
---TGTTTACTTT--
 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:4
Score:0.96
Offset:3
Orientation:reverse strand
Alignment:BSNTGTTTACWYWGN
---TGTTTACTTT--
 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T A G C T C G A T A C G T A C G T

pha-4/MA0546.1/Jaspar

Match Rank:5
Score:0.94
Offset:3
Orientation:reverse strand
Alignment:BSNTGTTTACWYWGN
---TGTTTACTTT--
 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G
A C G T A C G T A C G T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C A T G A C T C G A T A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:6
Score:0.94
Offset:3
Orientation:forward strand
Alignment:BSNTGTTTACWYWGN
---TRTTTACTTW--
 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G
A C G T A C G T A C G T A C G T C T A G A G C T A C G T A C G T C T G A A G T C G A C T A G C T C G T A A C G T A C G T

FOXA2/MA0047.3/Jaspar

Match Rank:7
Score:0.94
Offset:1
Orientation:reverse strand
Alignment:BSNTGTTTACWYWGN
-NNTGTTTACAT---
 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G
A C G T G C A T C G T A C G A T T C A G C G A T C A G T C A G T C G T A G A T C G C T A G A C T A C G T A C G T A C G T

FOXA3/MA1683.1/Jaspar

Match Rank:8
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:BSNTGTTTACWYWGN
-NNTGTTTACNN---
 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G
A C G T G C A T G C T A C G A T T C A G C G A T C A G T C A G T C T G A G A T C G C T A G A C T A C G T A C G T A C G T

FOXC1/MA0032.2/Jaspar

Match Rank:9
Score:0.93
Offset:2
Orientation:reverse strand
Alignment:BSNTGTTTACWYWGN
--ATATTTACATA--
 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G
A C G T A C G T C G T A G A C T T C G A G A C T C A G T C A G T C G T A A G T C G C T A G A C T C G T A A C G T A C G T

FOXC2/MA0846.1/Jaspar

Match Rank:10
Score:0.93
Offset:1
Orientation:reverse strand
Alignment:BSNTGTTTACWYWGN
-TTTGTTTACTTA--
 A G T C T A G C G A C T A C G T C T A G A C G T A C G T A C G T C T G A A G T C G C T A G A C T C G T A C T A G A C T G
A C G T C G A T C G A T G A C T T C A G G A C T C A G T C A G T C T G A A G T C C G A T G A C T C G T A A C G T A C G T