Information for Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer (Motif 28)


Reverse Opposite:

p-value:0.000e+00
log p-value:-1.440e+03
Information Content per bp:1.747
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:ATGAATATTC
ATGAATATTC

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.96
Offset:0
Orientation:forward strand
Alignment:ATGAATATTC
ATGMATATDC

unc-86/MA0926.1/Jaspar

Match Rank:3
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:ATGAATATTC
ATGCATAT--

OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:4
Score:0.84
Offset:-3
Orientation:reverse strand
Alignment:---ATGAATATTC--
CTCATGAATATTCAT

vvl/dmmpmm(Pollard)/fly

Match Rank:5
Score:0.82
Offset:1
Orientation:forward strand
Alignment:ATGAATATTC
-TGCATA---

vvl/MA0254.1/Jaspar

Match Rank:6
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:ATGAATATTC
-TGCATA---

vvl/dmmpmm(SeSiMCMC)/fly

Match Rank:7
Score:0.82
Offset:1
Orientation:forward strand
Alignment:ATGAATATTC
-TGCATAA--

vvl/dmmpmm(Bigfoot)/fly

Match Rank:8
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:ATGAATATTC
-TGAATA---

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.80
Offset:-5
Orientation:forward strand
Alignment:-----ATGAATATTC--
AAAATATGCATAATAAA

KAN4/MA1028.1/Jaspar

Match Rank:10
Score:0.78
Offset:2
Orientation:forward strand
Alignment:ATGAATATTC
--GAATATTC