Information for Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer (Motif 216)


Reverse Opposite:

p-value:0.000e+00
log p-value:-8.327e+02
Information Content per bp:1.616
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GTCATGCHTGRCTGS
GTCATGCHTGRCTGS

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.95
Offset:-1
Orientation:reverse strand
Alignment:-GTCATGCHTGRCTGS
NGTCACGCTTGGCTGC

PAX5/MA0014.2/Jaspar

Match Rank:3
Score:0.87
Offset:0
Orientation:reverse strand
Alignment:GTCATGCHTGRCTGS----
GTCACGCTTGGCTGCNCNN

PAX9/MA0781.1/Jaspar

Match Rank:4
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-GTCATGCHTGRCTGS-
CGTCACGCATGACTGCA

PAX1/MA0779.1/Jaspar

Match Rank:5
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GTCATGCHTGRCTGS-
CGTCACGCATGACTGCA

Pax6/MA0069.1/Jaspar

Match Rank:6
Score:0.71
Offset:0
Orientation:forward strand
Alignment:GTCATGCHTGRCTGS
TTCACGCATGAGTT-

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:GTCATGCHTGRCTGS-----
TTTMCGCTTSABTGAACACN

PL0008.1_hlh-29/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---GTCATGCHTGRCTGS
TNNGCCACGCGTGNNNN-

prd-PD/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GTCATGCHTGRCTGS
TNTCGTCACGGTTGACA--

ASH1/Literature(Harbison)/Yeast

Match Rank:10
Score:0.59
Offset:7
Orientation:forward strand
Alignment:GTCATGCHTGRCTGS
-------CTGACT--