Information for PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer (Motif 212)


Reverse Opposite:

p-value:0.000e+00
log p-value:-2.246e+03
Information Content per bp:1.548
Total Number of Sequences:0
Total Number of Target Sequences:0
Total Instances of Motif:0
Total Instances of Motif in Targets:0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:NGTGTTCAVTSAAGCGKAAA
NGTGTTCAVTSAAGCGKAAA

Pax6/MA0069.1/Jaspar

Match Rank:2
Score:0.80
Offset:6
Orientation:reverse strand
Alignment:NGTGTTCAVTSAAGCGKAAA
------AANTCATGCGTGAA

PAX5/MA0014.2/Jaspar

Match Rank:3
Score:0.77
Offset:1
Orientation:forward strand
Alignment:NGTGTTCAVTSAAGCGKAAA
-GAGGGCAGCCAAGCGTGAC

PAX1/MA0779.1/Jaspar

Match Rank:4
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:NGTGTTCAVTSAAGCGKAAA-
----NGCANTCATGCGTGACG

PAX9/MA0781.1/Jaspar

Match Rank:5
Score:0.73
Offset:4
Orientation:reverse strand
Alignment:NGTGTTCAVTSAAGCGKAAA-
----TGCAGTCATGCGTGACG

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.72
Offset:5
Orientation:forward strand
Alignment:NGTGTTCAVTSAAGCGKAAA-
-----GCAGCCAAGCGTGACN

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:7
Score:0.71
Offset:5
Orientation:reverse strand
Alignment:NGTGTTCAVTSAAGCGKAAA
-----SCAGYCADGCATGAC

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:8
Score:0.57
Offset:3
Orientation:forward strand
Alignment:NGTGTTCAVTSAAGCGKAAA
---AGCCACTCAAG------

PB0005.1_Bbx_1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:NGTGTTCAVTSAAGCGKAAA
-TAATTCAATGAAGTG----

Dux/MA0611.1/Jaspar

Match Rank:10
Score:0.56
Offset:5
Orientation:forward strand
Alignment:NGTGTTCAVTSAAGCGKAAA
-----CCAATCAA-------