Information for PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer (Motif 210)


Reverse Opposite:

p-value:0.000e+00
log p-value:-2.513e+03
Information Content per bp:1.590
Total Number of Sequences:49999.7
Total Number of Target Sequences:3602.0
Total Instances of Motif:1236.0
Total Instances of Motif in Targets:981.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:GCAGCCAAGCGTGACN
GCAGCCAAGCGTGACN

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:2
Score:0.95
Offset:0
Orientation:reverse strand
Alignment:GCAGCCAAGCGTGACN
SCAGYCADGCATGAC-

PAX5/MA0014.2/Jaspar

Match Rank:3
Score:0.93
Offset:-4
Orientation:forward strand
Alignment:----GCAGCCAAGCGTGACN
GAGGGCAGCCAAGCGTGAC-

PAX9/MA0781.1/Jaspar

Match Rank:4
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCCAAGCGTGACN
TGCAGTCATGCGTGACG

PAX1/MA0779.1/Jaspar

Match Rank:5
Score:0.87
Offset:-1
Orientation:reverse strand
Alignment:-GCAGCCAAGCGTGACN
NGCANTCATGCGTGACG

Pax6/MA0069.1/Jaspar

Match Rank:6
Score:0.74
Offset:1
Orientation:reverse strand
Alignment:GCAGCCAAGCGTGACN
-AANTCATGCGTGAA-

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:7
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----GCAGCCAAGCGTGACN
NGTGTTCAVTSAAGCGKAAA-

prd-PD/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:GCAGCCAAGCGTGACN---
--TGTCAACCGTGACGANA

Pax2/MA0067.1/Jaspar

Match Rank:9
Score:0.64
Offset:8
Orientation:reverse strand
Alignment:GCAGCCAAGCGTGACN
--------NCGTGACN

prd/dmmpmm(Noyes)/fly

Match Rank:10
Score:0.63
Offset:7
Orientation:reverse strand
Alignment:GCAGCCAAGCGTGACN----
-------AGCGTGACGGATT