Information for FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer (Motif 100)


Reverse Opposite:

p-value:0.000e+00
log p-value:-1.228e+03
Information Content per bp:1.611
Total Number of Sequences:50000.9
Total Number of Target Sequences:897.0
Total Instances of Motif:1067.4
Total Instances of Motif in Targets:538.0
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer

Match Rank:1
Score:1.00
Offset:0
Orientation:forward strand
Alignment:AGGTCANTGACCTN
AGGTCANTGACCTN

EcR/usp/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.93
Offset:-1
Orientation:forward strand
Alignment:-AGGTCANTGACCTN
GAGGTCAATGACCTC

EcR::usp/MA0534.1/Jaspar

Match Rank:3
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-AGGTCANTGACCTN
AAGGTCAATGAACTN

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.69
Offset:0
Orientation:forward strand
Alignment:AGGTCANTGACCTN
AGGTCA--------

RORA/MA0071.1/Jaspar

Match Rank:5
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGGTCANTGACCTN
ATCAAGGTCA--------

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.64
Offset:6
Orientation:reverse strand
Alignment:AGGTCANTGACCTN
------GTGACCTT

Hr46/dmmpmm(Bergman)/fly

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGGTCANTGACCTN
GGGTCA--------

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:8
Score:0.62
Offset:6
Orientation:forward strand
Alignment:AGGTCANTGACCTN--
------NTGACCTTGA

NR2F1/MA0017.2/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:AGGTCANTGACCTN--
---CNNTTGACCTTTG

ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:10
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AGGTCANTGACCTN
-RGTTAGTGCCCY-